PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01737g02018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 276aa    MW: 31013.7 Da    PI: 5.8705
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01737g02018.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.11.1e-2196156257
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               r+R+t+t+ ql++Le+ Fe+ n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  Peinf101Scf01737g02018.1  96 RQRWTPTPMQLQILERIFEQgNGTPSKQKIKDITSELsqhgQISETNVYNWFQNRRARSKR 156
                               89*****************99**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.07892157IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-1892161IPR009057Homeodomain-like
SMARTSM003891.0E-1494161IPR001356Homeobox domain
SuperFamilySSF466898.13E-1995160IPR009057Homeodomain-like
CDDcd000861.50E-1496158No hitNo description
PfamPF000461.8E-1996156IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEWEKQQQQQ QQPPQMVEEL AGGGGGGSGS GMFVKVMTDE QMEVLRKQIA VYATICEQLV  60
DLHKSMASQH DLAGARLGNL YCDPLVMSAG HKITGRQRWT PTPMQLQILE RIFEQGNGTP  120
SKQKIKDITS ELSQHGQISE TNVYNWFQNR RARSKRKQQV TTTNNAESEV ETEVESPNEK  180
KTKPEDLQSP HMTTTRAEDL GYQNPEVSSG MHSLDPRTSK PEPLFPSESI SKPAGSYGEM  240
SFYGMSNPRM DQLMGKMEVP ASYHPYLHAE DYNMTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149157RRARSKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154500.0AC215450.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0026H18, complete sequence.
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009777417.11e-172PREDICTED: WUSCHEL-related homeobox 8-like
RefseqXP_016442227.11e-172PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotO817889e-89WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLM0ZMN11e-172M0ZMN1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000039801e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56752437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-89WUSCHEL related homeobox 13